Publications

  1. Biller M, Kabir S, Nipper S, Allen S, Kayali Y, Kuncik S, Sasanuma H, Zhou P, Vaziri C, Tomida J. REV7 associates with ATRIP and inhibits ATR kinase activity. Nucleic Acids Res. 2026 Jan 14;54(2):gkaf1527. PMID: 41562258
  2. Chiou LF, Droby GN, Jayaprakash D, Anand JR, Zhang X, Yang Y, Mills CA, Webb TS, Barker NK, Xie J, Wu D, Herring LE, Tomida J, Bowser JL, Vaziri C. The RING finger E3 ligase RNF25 protects DNA replication forks independently of its canonical roles in ubiquitin signaling. Nat Commun. 2025 Aug 5;16(1):7214. PMID: 40764480
  3. Pestana K, Ford A, Rama R, Abagero B, Kepple D, Tomida J, Popovici J, Yewhalaw D, Lo E. Copy Number Variations of Plasmodium vivax DBP1, EBP/DBP2, and RBP2b in Ethiopians Who Are Duffy Positive and Duffy Negative. J Infect Dis. 2024 Oct 16;230(4):1004-1012. PMID: 39102894
  4. Biller M, Kabir S, Boado C, Nipper S, Saffa A, Tal A, Vaziri C, Tomida, J. REV7-p53 interaction inhibits ATM-mediated DNA damage signaling. Cell Cycle, 2024 Feb;23(4):339-352. PMID: 38557443
  5. Ben Yamin B, Ahmed-Seghir S, Tomida J, Despras E, Pouvelle C, Yurchenko A, Goulas J, Corre R, Delacour Q, Droin N, Dessen P, Goidin D, Lange SS, Bhetawal S, Mitjavila-Garcia MT, Baldacci G, Nikolaev S, Cadoret JC, Wood RD, Kannouche PL. DNA polymerase zeta contributes to heterochromatin replication to prevent genome instability. EMBO J. 2021 Nov 2;40(21):e104543. PMID: 34533226
  6. Martin SK, Tomida J, Wood RD. Disruption of DNA polymerase ζ engages an innate immune response. Cell Report, 34(8):108775. 2/2021. PMID: 33626348
  7. Kepple D, Pestana K, Tomida J, Abebe A, Golassa L, Lo E. Alternative Invasion Mechanisms and Host Immune Response to Plasmodium vivax Malaria: Trends and Future Directions. 9(1):15. 12/2020. PMID: 33374596.
  8. Dixon JM, Tomida J, Egusa S. Identifying the Red-Luminophore-Forming Domain in Serum Albumin-Gold Complexes. J Phys Chem Lett. 2020;11(9):3345-3349.
  9. Fackrell K, Bobins L, Parul, Tomida J. FAM35A/SHLD2/RINN2: A Novel Determinant of DSB Repair Pathway Choice and Genome Stability in Cancer. Environ Mol Mutagen. 2020 Aug;61(7):709-715
  10. Okamoto Y, Abe M, Itaya A, Tomida J, Ishiai M, Takaori-Kondo A, Taoka M, Isobe T, Takata M. FANCD2 protects genome stability by recruiting RNA processing enzymes to resolve R-loops during mild replication stress. FEBS J 286(1):139-150. 1/2019. PMID: 30431240
  11. Tomida J, Takata K, Bhetawal S, Person MD, Chao HP, Tang DG, Wood RD. FAM35A associates with REV7 and modulates DNA damage responses of normal and BRCA1-defective cells. EMBO J 37(12): 6/2018. PMCID: 29789392
  12. Ishiai M, Sato K, Tomida J, Kitao H, Kurumizaka H, Takata M. Activation of the FA pathway mediated by phosphorylation and ubiquitination. Mutat Res. e-Pub 5/2017. PMID: 28552166.
  13. Lin YC, Owen N, Minko IG, Lange SS, Tomida J, Li L, Stone MP, Wood RD, McCullough AK, Lloyd RS. DNA polymerase ζ limits chromosomal damage and promotes cell survival following aflatoxin exposure. Proc Natl Acad Sci U S A 113(48):13774-13779, 11/2016. e-Pub 11/2016. PMCID: PMC5137696.
  14. Schibler A, Koutelou E, Tomida J, Wilson-Pham M, Wang L, Lu Y, Cabrera AP, Chosed RJ, Li W, Li B, Shi X, Wood RD, Dent SY. Histone H3K4 methylation regulates deactivation of the spindle assembly checkpoint through direct binding of Mad2. Genes Dev 30(10):1187-97, 5/2016. e-Pub 5/2016. PMCID: PMC4888839.
  15. Lange SS, Tomida J, Boulware KS, Bhetawal S, Wood RD. The Polymerase Activity of Mammalian DNA Pol ζ Is Specifically Required for Cell and Embryonic Viability. PLoS Genet 12(1):e1005759, 1/2016. e-Pub 1/2016. PMCID: PMC4699697.
  16. Takata K, Tomida J, Reh S, Swanhart LM, Takata M, Hukriede NA, Wood RD. Conserved overlapping gene arrangement, restricted expression and biochemical activities of DNA polymerase ν; (POLN). J Biol Chem. e-Pub 8/2015. PMCID: PMC4591814.
  17. Tomida J, Takata K, Lange SS, Schibler AC, Yousefzadeh MJ, Bhetawal S, Dent SY, Wood RD. REV7 is essential for DNA damage tolerance via two REV3L binding sites in mammalian DNA polymerase ζ. Nucleic Acids Res 43(2):1000-11, 1/2015. e-Pub 1/2015. PMCID: PMC4333420.
  18. Yousefzadeh MJ, Wyatt DW, Takata K, Mu Y, Hensley SC, Tomida J, Bylund GO, Doublié S, Johansson E, Ramsden DA, McBride KM, Wood RD. Mechanism of Suppression of Chromosomal Instability by DNA Polymerase POLQ. PLoS Genet 10(10):e1004654, 10/2014. e-Pub 10/2014. PMCID: PMC4183433.
  19. Unno J, Itaya A, Taoka M, Sato K, Tomida J, Sakai W, Sugasawa K, Ishiai M, Ikura T, Isobe T, Kurumizaka H, Takata M. FANCD2 binds CtIP and regulates DNA-end resection during DNA interstrand crosslink repair. Cell Rep 7(4):1039-47, 5/2014. e-Pub 5/2014. PMID: 24794430.
  20. Takata K, Reh S, Tomida J, Person MD, Wood RD. Human DNA helicase HELQ participates in DNA interstrand crosslink tolerance with ATR and RAD51 paralogs. Nat Commun 4:2338, 2013. PMCID: PMC3778836
  21. Tomida J, Itaya A, Shigechi T, Unno J, Uchida E, Ikura M, Masuda Y, Matsuda S, Adachi J, Kobayashi M, Meetei AR, Maehara Y, Yamamoto K, Kamiya K, Matsuura A, Matsuda T, Ikura T, Ishiai M, Takata M. A novel interplay between the Fanconi anemia core complex and ATR-ATRIP kinase during DNA cross-link repair. Nucleic Acids Res 41(14):6930-41, 8/2013. e-Pub 5/2013. PMCID: PMC3737553.
  22. Shigechi T, Tomida J, Sato K, Kobayashi M, Eykelenboom JK, Pessina F, Zhang Y, Uchida E, Ishiai M, Lowndes NF, Yamamoto K, Kurumizaka H, Maehara Y, Takata M. ATR-ATRIP kinase complex triggers activation of the Fanconi anemia DNA repair pathway. Cancer Res 72(5):1149-56, 3/2012. e-Pub 1/2012. PMID: 22258451.
  23. Hanafusa T, Habu T, Tomida J, Ohashi E, Murakumo Y, Ohmori H. Overlapping in short motif sequences for binding to human REV7 and MAD2 proteins. Genes Cells. e-Pub 1/2010. PMID: 20088965.
  24. Ohashi E, Hanafusa T, Kamei K, Song I, Tomida J, Hashimoto H, Vaziri C, Ohmori H. Identification of a novel REV1-interacting motif necessary for DNA polymerase kappa function. Genes Cells 14(2):101-11, 2/2009. e-Pub 1/2009. PMCID: PMC3103050.
  25. Ishiai M, Kitao H, Smogorzewska A, Tomida J, Kinomura A, Uchida E, Saberi A, Kinoshita E, Kinoshita-Kikuta E, Koike T, Tashiro S, Elledge SJ, Takata M. FANCI phosphorylation functions as a molecular switch to turn on the Fanconi anemia pathway. Nat Struct Mol Biol 15(11):1138-46, 11/2008. e-Pub 10/2008. PMCID: PMC3293454.
  26. Tomida J, Masuda Y, Hiroaki H, Ishikawa T, Song I, Tsurimoto T, Tateishi S, Shiomi T, Kamei Y, Kim J, Kamiya K, Vaziri C, Ohmori H, Todo T. DNA damage-induced ubiquitylation of RFC2 subunit of replication factor C complex. J Biol Chem 283(14):9071-9, 4/2008. e-Pub 2/2008. PMCID: PMC2431014
  27. Gamo S, Tomida J, Dodo K, Keyakidani D, Matakatsu H, Yamamoto D, Tanaka Y. Calreticulin mediates anesthetic sensitivity in Drosophila melanogaster. Anesthesiology 99(4):867-75, 10/2003. PMID: 14508319
  28. Usui-Aoki K, Ito H, Ui-Tei K, Takahashi K, Lukacsovich T, Awano W, Nakata H, Piao ZF, Nilsson EE, Tomida J, Yamamoto D. Formation of the male-specific muscle in female Drosophila by ectopic fruitless expression. Nat Cell Biol 2(8):500-6, 8/2000. PMID: 10934470.