{"id":667,"date":"2020-05-15T12:35:41","date_gmt":"2020-05-15T16:35:41","guid":{"rendered":"http:\/\/pages.charlotte.edu\/kchakrab\/?page_id=667"},"modified":"2025-08-10T11:23:25","modified_gmt":"2025-08-10T15:23:25","slug":"publications","status":"publish","type":"page","link":"https:\/\/pages.charlotte.edu\/kchakrab\/publications\/","title":{"rendered":"Selected Publications"},"content":{"rendered":"\n<div class=\"wp-block-cover alignfull is-light\"><img loading=\"lazy\" decoding=\"async\" width=\"1100\" height=\"400\" class=\"wp-block-cover__image-background wp-image-1056\" alt=\"\" src=\"http:\/\/pages.charlotte.edu\/kchakrab\/wp-content\/uploads\/sites\/1189\/2020\/08\/header-img-publications-1100x400-1.jpg\" data-object-fit=\"cover\" srcset=\"https:\/\/pages.charlotte.edu\/kchakrab\/wp-content\/uploads\/sites\/1189\/2020\/08\/header-img-publications-1100x400-1.jpg 1100w, https:\/\/pages.charlotte.edu\/kchakrab\/wp-content\/uploads\/sites\/1189\/2020\/08\/header-img-publications-1100x400-1-300x109.jpg 300w, https:\/\/pages.charlotte.edu\/kchakrab\/wp-content\/uploads\/sites\/1189\/2020\/08\/header-img-publications-1100x400-1-1024x372.jpg 1024w, https:\/\/pages.charlotte.edu\/kchakrab\/wp-content\/uploads\/sites\/1189\/2020\/08\/header-img-publications-1100x400-1-768x279.jpg 768w\" sizes=\"auto, (max-width: 1100px) 100vw, 1100px\" \/><span aria-hidden=\"true\" class=\"wp-block-cover__background has-background-dim-0 has-background-dim\"><\/span><div class=\"wp-block-cover__inner-container is-layout-flow wp-block-cover-is-layout-flow\">\n<p class=\"has-text-align-center has-large-font-size\"><\/p>\n<\/div><\/div>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Klotz KE, Camporeale C and Chakrabarti K <\/strong>(2025) Dynamic Regulation of RNA m6A Methylation in the Ribonucleoprotein Complexes in Apicomplexan and Kinetoplastid Parasites. <strong>Biomedical  Journal<\/strong> (Accepted)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Catacalos-Goad, Chakrabarti M, Salem DH, Camporeale C, Somalraju S, Tegowski M, Singh R, Reid RW, Janies DA, Meyer KD, Janga SC, Hunt A and Chakrabarti K.<\/strong> (2025) Nucleotide-resolution Mapping of RNA N6-Methyladenosine (m6A) modifications and comprehensive analysis of global polyadenylation events in mRNA 3&#8242; end processing in malaria pathogen\u00a0<em>Plasmodium falciparum<\/em>. <strong>bioRxiv.<\/strong> DOI: <a href=\"https:\/\/doi.org\/10.1101\/2025.01.07.631827\">https:\/\/doi.org\/10.1101\/2025.01.07.631827<\/a><\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Klotz KE<\/strong> <strong>and\u00a0Chakrabarti K.<\/strong> (2024) <a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/38907926\/\">RNA Folding, Mutation, and Detection.<\/a> <strong>Methods Mol Biol.<\/strong>; 2822:311-334. <a href=\"https:\/\/pages.charlotte.edu\/kchakrab\/?page_id=1342\" data-type=\"page\" data-id=\"1342\">https:\/\/doi: 10.1007\/978-1-0716-3918-4_20<\/a><\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Davis JA, Reyes AV, Nitika, Saha A, Wolfgeher DJ, Xu S, Truman AW, Li B and Chakrabarti K.<\/strong> (2023) Proteomic Analysis Defines the Interactome of Telomerase in the Protozoan Parasite, <em>Trypanosoma brucei<\/em>. <strong>Frontiers in Cell &amp; Dev Biol. <\/strong>Vol 11: 1-11. DOI: &nbsp;<a href=\"https:\/\/doi.org\/10.3389\/fcell.2023.1110423\">https:\/\/doi.org\/10.3389\/fcell.2023.1110423<\/a><\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Klotz K, Yasmin R, and Chakrabarti K.<\/strong> (2022) Dissecting Functional Biological Interactions Using Modular RNA Nanoparticles. <strong>Molecules<\/strong> (Early online) <a href=\"https:\/\/www.mdpi.com\/1420-3049\/28\/1\/228\">https:\/\/www.mdpi.com\/1420-3049\/28\/1\/228<\/a>  <\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Catacalos C, Krohannon A, Somalraju S, Meyer KD, Janga SC and Chakrabarti K.<\/strong> (2022) Epitranscriptomic Regulation in Parasitic Protists: Role of RNA Chemical Modifications in Post-transcriptional Gene Regulation. <strong>PLOS Pathogens<\/strong> (Early online) <a href=\"https:\/\/doi.org\/10.1371\/journal.ppat.1010972\">https:\/\/doi.org\/10.1371\/journal.ppat.1010972<\/a><\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Davis JA and Chakrabarti K.<\/strong> (2022) Telomerase Ribonucleoprotein and Genome Integrity- an Emerging Connection in Protozoan Parasites. <strong>Wiley Interdiscip Rev RNA. <\/strong>e1710. <a href=\"10.1002\/wrna.1710\">https:\/\/wires.onlinelibrary.wiley.com\/doi\/abs\/10.1002\/wrna.1710<\/a><\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Dey A, Monroy-Eklund A, Klotz K, Saha A, Davis JA, Li B, Laederach A and Chakrabarti K.<\/strong> (2021) In vivo Architecture&nbsp;of&nbsp;the Telomerase RNA Catalytic Core in <em>Trypanosoma brucei<\/em>. <strong>Nucleic Acids Research<\/strong>, 49(21):12445-12466.&nbsp;<a href=\"10.1093\/nar\/gkab1042\">doi: 10.1093\/nar\/gkab1042<\/a> <\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Alvarez DR*, Ospina A*, Barwell T, Zheng B, Dey A, Li C, Basu S, Shi X, Kadri S and Chakrabarti K.<\/strong> (2021) The RNA structureome in the asexual blood stages of malaria pathogen <em>Plasmodium falciparum. <\/em><strong>RNA Biology<\/strong>, 23: 1-18 DOI: <a href=\"https:\/\/doi.org\/10.1080\/15476286.2021.1926747\">https:\/\/doi.org\/10.1080\/15476286.2021.1926747<\/a><\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Mohanta A and Chakrabarti K. <\/strong>(2021) DBR1 functions in mRNA processing, intron turnover and human diseases. <strong>Biochimie<\/strong>, 180: 134-142. <strong>DOI:<\/strong>&nbsp;<a rel=\"noreferrer noopener\" target=\"_blank\" href=\"https:\/\/doi.org\/10.1016\/j.biochi.2020.10.003\">10.1016\/j.biochi.2020.10.003<\/a><\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Fessler AB, Dey A, Finis DS, Fowler AJ, Chakrabarti K, Ogle CA.<\/strong> (2020) Innately Water-Soluble Isatoic Anhydrides with Modulated Reactivities for RNA SHAPE Analysis. <strong>ACS Bioconjugate Chemistry,<\/strong> 18;31(3):884-888. (<a href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.bioconjchem.0c00024\">https:\/\/pubs.acs.org\/doi\/10.1021\/acs.bioconjchem.0c00024<\/a>)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Xiao H, Dey and Chakrabarti et. al.<\/strong> (2019) Mechanistic Model of Telomerase Ribonucleoprotein Enzyme. In: \u2018The Non-coding RNA Journal Club: Highlights on Recent Papers-7. <strong>Noncoding RNA<\/strong>. 11;5(2). <a href=\"https:\/\/www.mdpi.com\/2311-553X\/5\/2\/40\/htm\">https:\/\/www.mdpi.com\/2311-553X\/5\/2\/40\/htm<\/a><\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Fessler A, Dey A, Garmon C, Finis D, Saleh NA, Fowler A, Jones D, Chakrabarti K and Ogle C.<\/strong> (2018) Water-Soluble Isatoic Anhydrides: A Platform for RNA-SHAPE Analysis and Protein Bioconjugation. <strong>ACS Bioconjugate Chemistry<\/strong>, (<a rel=\"noreferrer noopener\" href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.bioconjchem.8b00518\" target=\"_blank\">https:\/\/pubs.acs.org\/doi\/10.1021\/acs.bioconjchem.8b00518<\/a>)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Dey A and Chakrabarti K<\/strong> (2018) Current Perspectives of Telomerase Structure and) Function in Eukaryotes with Emerging Views on Telomerase in Human Parasites. <strong>Int. J. Mol. Sci.<\/strong> (<a rel=\"noreferrer noopener\" href=\"http:\/\/www.mdpi.com\/1422-0067\/19\/2\/333\" target=\"_blank\">http:\/\/www.mdpi.com\/1422-0067\/19\/2\/333<\/a>).<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Chakrabarti K. \u2018RNA\u2019 <\/strong>(2015). Edited by Marcel Hommel, Peter G. Kremsner in <strong>Encyclopedia of Malaria<\/strong>, Springer Publication. pp 1-17 (ISBN: 978-1-4614-8757-9) (<a rel=\"noreferrer noopener\" href=\"http:\/\/link.springer.com\/referenceworkentry\/10.1007\/978-1-4614-8757-9_53-1\" target=\"_blank\">http:\/\/link.springer.com\/referenceworkentry\/10.1007\/978-1-4614-8757-9_53-1<\/a>)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Sandhu R, Sanford S, Basu S, Park M, Pandya U, Li B and Chakrabarti K.<\/strong> (2013) A Trans-spliced Telomerase RNA dictates telomere synthesis in Trypanosoma brucei.<strong> Cell Research<\/strong> 23(4):537-51 (<a rel=\"noreferrer noopener\" href=\"http:\/\/www.nature.com\/cr\/journal\/v23\/n4\/full\/cr201335a.html\" target=\"_blank\">http:\/\/www.nature.com\/cr\/journal\/v23\/n4\/full\/cr201335a.html<\/a>)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Simoes-Barbosa A, Chakrabarti K, Pearson M, Benarroch D, Shuman S, Johnson PJ.<\/strong> (2012) Box H\/ACA snoRNAs are preferred substrates for the trimethylguanosine synthase in the divergent unicellular eukaryote Trichomonas vaginalis. <strong>RNA<\/strong> 18(9):1656-65 (<a rel=\"noreferrer noopener\" href=\"http:\/\/rnajournal.cshlp.org\/content\/18\/9\/1656.long\" target=\"_blank\">http:\/\/rnajournal.cshlp.org\/content\/18\/9\/1656.long<\/a>)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Ares M Jr. and Chakrabarti K.<\/strong> (2008) Stuttering against marginotomy. <strong>Nature Structural Mol. Biol.<\/strong> 15(1):18-19 (<a rel=\"noreferrer noopener\" href=\"http:\/\/www.nature.com\/nsmb\/journal\/v15\/n1\/full\/nsmb0108-18.html\" target=\"_blank\">http:\/\/www.nature.com\/nsmb\/journal\/v15\/n1\/full\/nsmb0108-18.html<\/a>)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Chakrabarti K, Pearson M, Grate L, Sterne-Weiler T, Deans J, Donohue J and Ares M Jr.<\/strong> (2007) Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis. <strong>RNA<\/strong> 13:1923-1939 (<a rel=\"noreferrer noopener\" href=\"http:\/\/rnajournal.cshlp.org\/content\/13\/11\/1923.long\" target=\"_blank\">http:\/\/rnajournal.cshlp.org\/content\/13\/11\/1923.long<\/a>)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Schiller MR, Chakrabarti K, King GF, Schiller NI, Eipper BA and Maciejewski M.<\/strong> (2006) Regulation of Rho GEF activity by intra-molecular and inter-molecular SH3 interactions. <strong>Journal of Biological Chemistry<\/strong> 281(27):18774-86. (<a rel=\"noreferrer noopener\" href=\"http:\/\/www.jbc.org\/content\/281\/27\/18774.long\" target=\"_blank\">http:\/\/www.jbc.org\/content\/281\/27\/18774.long<\/a>)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Chakrabarti K, Lin R, Schiller NI, Wang Y, Koubi D, Fan YX, Rudkin BB, Johnson GR, Schiller MR.<\/strong> (2005) Critical role for Kalirin in nerve growth factor signaling through TrkA. <strong>Molecular and Cellular Biology<\/strong>. 25(12):5106-5118. (<a href=\"http:\/\/www.jbc.org\/content\/281\/27\/18774.long\">http:\/\/www.jbc.org\/content\/281\/27\/18774.long<\/a>)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Chakrabarti K, Tse MT, Gray C, Chitnis CE, Craig A.<\/strong> (2004) Divergent binding sites on Intercellular Adhesion Molecule1 (ICAM-1) for variant Plasmodium falciparum isolates. <strong>Molecular Microbiology<\/strong>, 51:1039- 1049. (<a rel=\"noreferrer noopener\" href=\"http:\/\/onlinelibrary.wiley.com\/doi\/10.1046\/j.1365-2958.2003.03895.x\/full\" target=\"_blank\">http:\/\/onlinelibrary.wiley.com\/doi\/10.1046\/j.1365-2958.2003.03895.x\/full<\/a>)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Chattopadhyay R, Taneja T, Chakrabarti K, Pillai CR, Chitnis CE.<\/strong> (2004) Molecular analysis of the cytoadherence phenotype of a Plasmodium falciparum field isolate that binds intercellular adhesion molecule-1. <strong>Molecular and Biochemical Parasitology<\/strong> (Elsevier publications). 133(2):255-265. (<a rel=\"noreferrer noopener\" href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0166685103003128\" target=\"_blank\">http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0166685103003128<\/a>)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Sharma S, Chattopadhya R, Chakrabarti K, Pati S, Das BS, Chitnis CE.<\/strong> (2004) Epidemiology of malaria transmission and development of natural immunity in a malaria endemic village, San Dulakudar, in Orissa state, India. <strong>American Journal of Tropical Medicine &amp; Hygiene<\/strong> (ASTMH) 71(4): 457-65 (<a rel=\"noreferrer noopener\" href=\"http:\/\/www.ajtmh.org\/content\/71\/4\/457.long\" target=\"_blank\">http:\/\/www.ajtmh.org\/content\/71\/4\/457.long<\/a>)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Schiller MR, Chakrabarti K. Kalirin,<\/strong> a scaffold that confers specificity in neurotrophin signal Neuropeptide. 37: 168 (2003)<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":3445,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-667","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/pages.charlotte.edu\/kchakrab\/wp-json\/wp\/v2\/pages\/667","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/pages.charlotte.edu\/kchakrab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/pages.charlotte.edu\/kchakrab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/pages.charlotte.edu\/kchakrab\/wp-json\/wp\/v2\/users\/3445"}],"replies":[{"embeddable":true,"href":"https:\/\/pages.charlotte.edu\/kchakrab\/wp-json\/wp\/v2\/comments?post=667"}],"version-history":[{"count":35,"href":"https:\/\/pages.charlotte.edu\/kchakrab\/wp-json\/wp\/v2\/pages\/667\/revisions"}],"predecessor-version":[{"id":1378,"href":"https:\/\/pages.charlotte.edu\/kchakrab\/wp-json\/wp\/v2\/pages\/667\/revisions\/1378"}],"wp:attachment":[{"href":"https:\/\/pages.charlotte.edu\/kchakrab\/wp-json\/wp\/v2\/media?parent=667"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}