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Mac

TexMaker

November 24, 2014 by Andy Voelker
Categories: Math & Programming
Availability: Labs  |  Free Download
Comparable: 

Texmaker is a cross-platform open source LaTeX editor with an integrated PDF viewer. Texmaker is entirely a Qt app.

The editor includes full unicode support, inline spell checking, auto-completion, code folding and rectangular block selection. Regular expressions are also supported for the find-and-replace actions.  Texmaker includes wizards for the following tasks:

  • Generate a new document or a letter or a tabular environment.
  • Create tables, tabulars, figure environments, and so forth.
  • Export a LaTeX document via TeX4ht (HTML or ODT format).

Some of the LaTeX tags and mathematical symbols can be inserted in just one click and users can define an unlimited number of snippets with keyboard triggers.  Texmaker automatically locates errors and warnings detected in the log file after a compilation.  The integrated PDF viewer supports continuous, rotation and presentation mode. Direct and reverse synchronization between source TeX files and the resulting PDF file is supported via the SyncTeX support.  The Asymptote graphics language is also fully supported by Texmaker (for both editing and compilation).

TexMaker has replaced Kile in CLAS computer labs.

Tags: LaTeX

Spartan

November 21, 2014 by Andy Voelker
Categories: Analysis & Modeling

logo_SpartanStudentV6

Availability: Labs  |  Download
Comparable: ChemDraw

Spartan is a molecular modeling and computational chemistry application from Wavefunction. It contains code for molecular mechanics, semi-empirical methods, ab initio models, density functional models, post-Hartree–Fock models, and thermochemical recipes including G3(MP2) and T1.

Primary functions are to supply information about structures, relative stabilities and other properties of isolated molecules. Molecular mechanics calculations on complex molecules are common in the chemical community. Quantum chemical calculations, including Hartree–Fock molecular orbital calculations, but especially calculations that include electron correlation, are more time consuming in comparison.

Quantum chemical calculations are also called upon to furnish information about mechanisms and product distributions of chemical reactions, either directly by calculations on transition states, or based on the Hammond Postulate, by modeling the steric and electronic demands of the reactants. Quantitative calculations, leading directly to information about the geometries of transition states, and about reaction mechanisms in general, are increasingly common, while qualitative models are still needed for systems that are too large to be subjected to more rigorous treatments. Quantum chemical calculations can supply information to complement existing experimental data or replace it altogether, for example, atomic charges for QSAR analyses, and intermolecular potentials for molecular mechanics and molecular dynamics calculations.

Spartan applies computational chemistry methods (theoretical models) to a number of a standard tasks that provide calculated data applicable to the determination of molecular shape (conformation), structure (equilibrium and transition state geometry), NMR, IR, Raman, and UV/visible spectra, molecular (and atomic) properties, reactivity and selectivity.

Lab Availability
Tags: trm

VMware Fusion

November 21, 2014 by Andy Voelker
Categories: Productivity & Utility

VMware-Fusion-2-0-6-Update-Build-196839-2

Availability: Labs  |  Download
Comparable: Parallels

VMware Fusion allows Intel-based Macs to run operating systems such as Microsoft Windows, Linux, NetWare, BSD, or Solaris on virtual machines, along with their Mac OS X operating system.  This is useful for using different software pieces based on different operating system platforms on the same computer.  The Unity feature removes the windows start menu and desktop, focusing the window on just the application needed, and enabling a seamless and streamlines experience.  Fusion is also useful for testing out various operating systems and packages in a non-destructive environment.  Virtual machines, once created, can be backed up, restored, versioned and transported to other computers.  This means you can reconfigure the software without the fear of corruption or data loss.  You can also share virtual machines to be imported into other computers’ installation of Fusion, sharing an exact replica of your configuration, software, and data.

Because Fusion runs on top of Mac OS X, performance is decreased significantly from a native “bare metal” installation of the original operating system.  Fusion can also be an excellent substitute for running Boot Camp, a software package that allows a user to reboot into a native Windows environment.  UNCC ITS is ending support for BootCamp in 2015, so software packages like VM Fusion are best to use when Windows is needed on a Mac.

For more information visit VMWare Fusion.

Tags: hypervisorlinuxoperating systemvirtualization
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