Selected Publications

• Davis JA and Chakrabarti K. (2024) Molecular and Evolutionary Analysis of RNA-Protein Interactions in Telomerase Regulation. Noncoding RNA. 10(3), 36. DOI: https://doi.org/10.3390/ncrna10030036

• Klotz KE and Chakrabarti K. (2024) RNA Folding, Mutation, and Detection. Methods Mol Biol.; 2822:311-334. https://doi: 10.1007/978-1-0716-3918-4_20

• Davis JA, Reyes AV, Nitika, Saha A, Wolfgeher DJ, Xu S, Truman AW, Li B and Chakrabarti K. (2023) Proteomic Analysis Defines the Interactome of Telomerase in the Protozoan Parasite, Trypanosoma brucei. Frontiers in Cell & Dev Biol. Vol 11: 1-11. DOI:  https://doi.org/10.3389/fcell.2023.1110423

• Klotz K, Yasmin R, and Chakrabarti K. (2022) Dissecting Functional Biological Interactions Using Modular RNA Nanoparticles. Molecules (Early online) https://www.mdpi.com/1420-3049/28/1/228

• Catacalos C, Krohannon A, Somalraju S, Meyer KD, Janga SC and Chakrabarti K. (2022) Epitranscriptomic Regulation in Parasitic Protists: Role of RNA Chemical Modifications in Post-transcriptional Gene Regulation. PLOS Pathogens (Early online) https://doi.org/10.1371/journal.ppat.1010972

• Davis JA and Chakrabarti K. (2022) Telomerase Ribonucleoprotein and Genome Integrity- an Emerging Connection in Protozoan Parasites. Wiley Interdiscip Rev RNA. e1710. https://wires.onlinelibrary.wiley.com/doi/abs/10.1002/wrna.1710

• Dey A, Monroy-Eklund A, Klotz K, Saha A, Davis JA, Li B, Laederach A and Chakrabarti K. (2021) In vivo Architecture of the Telomerase RNA Catalytic Core in Trypanosoma brucei. Nucleic Acids Research, 49(21):12445-12466. doi: 10.1093/nar/gkab1042

• Alvarez DR*, Ospina A*, Barwell T, Zheng B, Dey A, Li C, Basu S, Shi X, Kadri S and Chakrabarti K. (2021) The RNA structureome in the asexual blood stages of malaria pathogen Plasmodium falciparum. RNA Biology, 23: 1-18 DOI: https://doi.org/10.1080/15476286.2021.1926747

• Mohanta A and Chakrabarti K. (2021) DBR1 functions in mRNA processing, intron turnover and human diseases. Biochimie, 180: 134-142. DOI: 10.1016/j.biochi.2020.10.003

• Fessler AB, Dey A, Finis DS, Fowler AJ, Chakrabarti K, Ogle CA. (2020) Innately Water-Soluble Isatoic Anhydrides with Modulated Reactivities for RNA SHAPE Analysis. ACS Bioconjugate Chemistry, 18;31(3):884-888. (https://pubs.acs.org/doi/10.1021/acs.bioconjchem.0c00024)

• Xiao H, Dey and Chakrabarti et. al. (2019) Mechanistic Model of Telomerase Ribonucleoprotein Enzyme. In: ‘The Non-coding RNA Journal Club: Highlights on Recent Papers-7. Noncoding RNA. 11;5(2). https://www.mdpi.com/2311-553X/5/2/40/htm

• Fessler A, Dey A, Garmon C, Finis D, Saleh NA, Fowler A, Jones D, Chakrabarti K and Ogle C. (2018) Water-Soluble Isatoic Anhydrides: A Platform for RNA-SHAPE Analysis and Protein Bioconjugation. ACS Bioconjugate Chemistry, (https://pubs.acs.org/doi/10.1021/acs.bioconjchem.8b00518)

• Dey A and Chakrabarti K (2018) Current Perspectives of Telomerase Structure and) Function in Eukaryotes with Emerging Views on Telomerase in Human Parasites. Int. J. Mol. Sci. (http://www.mdpi.com/1422-0067/19/2/333).

• Chakrabarti K. ‘RNA’ (2015). Edited by Marcel Hommel, Peter G. Kremsner in Encyclopedia of Malaria, Springer Publication. pp 1-17 (ISBN: 978-1-4614-8757-9) (http://link.springer.com/referenceworkentry/10.1007/978-1-4614-8757-9_53-1)

• Sandhu R, Sanford S, Basu S, Park M, Pandya U, Li B and Chakrabarti K. (2013) A Trans-spliced Telomerase RNA dictates telomere synthesis in Trypanosoma brucei. Cell Research 23(4):537-51 (http://www.nature.com/cr/journal/v23/n4/full/cr201335a.html)

• Simoes-Barbosa A, Chakrabarti K, Pearson M, Benarroch D, Shuman S, Johnson PJ. (2012) Box H/ACA snoRNAs are preferred substrates for the trimethylguanosine synthase in the divergent unicellular eukaryote Trichomonas vaginalis. RNA 18(9):1656-65 (http://rnajournal.cshlp.org/content/18/9/1656.long)

• Ares M Jr. and Chakrabarti K. (2008) Stuttering against marginotomy. Nature Structural Mol. Biol. 15(1):18-19 (http://www.nature.com/nsmb/journal/v15/n1/full/nsmb0108-18.html)

• Chakrabarti K, Pearson M, Grate L, Sterne-Weiler T, Deans J, Donohue J and Ares M Jr. (2007) Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis. RNA 13:1923-1939 (http://rnajournal.cshlp.org/content/13/11/1923.long)

• Schiller MR, Chakrabarti K, King GF, Schiller NI, Eipper BA and Maciejewski M. (2006) Regulation of Rho GEF activity by intra-molecular and inter-molecular SH3 interactions. Journal of Biological Chemistry 281(27):18774-86. (http://www.jbc.org/content/281/27/18774.long)

• Chakrabarti K, Lin R, Schiller NI, Wang Y, Koubi D, Fan YX, Rudkin BB, Johnson GR, Schiller MR. (2005) Critical role for Kalirin in nerve growth factor signaling through TrkA. Molecular and Cellular Biology. 25(12):5106-5118. (http://www.jbc.org/content/281/27/18774.long)

• Chakrabarti K, Tse MT, Gray C, Chitnis CE, Craig A. (2004) Divergent binding sites on Intercellular Adhesion Molecule1 (ICAM-1) for variant Plasmodium falciparum isolates. Molecular Microbiology, 51:1039- 1049. (http://onlinelibrary.wiley.com/doi/10.1046/j.1365-2958.2003.03895.x/full)

• Chattopadhyay R, Taneja T, Chakrabarti K, Pillai CR, Chitnis CE. (2004) Molecular analysis of the cytoadherence phenotype of a Plasmodium falciparum field isolate that binds intercellular adhesion molecule-1. Molecular and Biochemical Parasitology (Elsevier publications). 133(2):255-265. (http://www.sciencedirect.com/science/article/pii/S0166685103003128)

• Sharma S, Chattopadhya R, Chakrabarti K, Pati S, Das BS, Chitnis CE. (2004) Epidemiology of malaria transmission and development of natural immunity in a malaria endemic village, San Dulakudar, in Orissa state, India. American Journal of Tropical Medicine & Hygiene (ASTMH) 71(4): 457-65 (http://www.ajtmh.org/content/71/4/457.long)

• Schiller MR, Chakrabarti K. Kalirin, a scaffold that confers specificity in neurotrophin signal Neuropeptide. 37: 168 (2003)