Selected Publications

  • Davis JA, Reyes AV, Nitika, Saha A, Wolfgeher DJ, Xu S, Truman AW, Li B and Chakrabarti K. (2023) Proteomic Analysis Defines the Interactome of Telomerase in the Protozoan Parasite, Trypanosoma brucei. Frontiers in Cell & Dev Biol. Vol 11: 1-11. DOI:  https://doi.org/10.3389/fcell.2023.1110423
  • Catacalos C, Krohannon A, Somalraju S, Meyer KD, Janga SC and Chakrabarti K. (2022) Epitranscriptomic Regulation in Parasitic Protists: Role of RNA Chemical Modifications in Post-transcriptional Gene Regulation. PLOS Pathogens (Early online) https://doi.org/10.1371/journal.ppat.1010972
  • Dey A, Monroy-Eklund A, Klotz K, Saha A, Davis JA, Li B, Laederach A and Chakrabarti K. (2021) In vivo Architecture of the Telomerase RNA Catalytic Core in Trypanosoma brucei. Nucleic Acids Research, 49(21):12445-12466. doi: 10.1093/nar/gkab1042
  • Alvarez DR*, Ospina A*, Barwell T, Zheng B, Dey A, Li C, Basu S, Shi X, Kadri S and Chakrabarti K. (2021) The RNA structureome in the asexual blood stages of malaria pathogen Plasmodium falciparum. RNA Biology, 23: 1-18 DOI: https://doi.org/10.1080/15476286.2021.1926747
  • Mohanta A and Chakrabarti K. (2021) DBR1 functions in mRNA processing, intron turnover and human diseases. Biochimie, 180: 134-142. DOI: 10.1016/j.biochi.2020.10.003
  • Xiao H, Dey and Chakrabarti et. al. (2019) Mechanistic Model of Telomerase Ribonucleoprotein Enzyme. In: ‘The Non-coding RNA Journal Club: Highlights on Recent Papers-7. Noncoding RNA. 11;5(2). https://www.mdpi.com/2311-553X/5/2/40/htm
  • Fessler A, Dey A, Garmon C, Finis D, Saleh NA, Fowler A, Jones D, Chakrabarti K and Ogle C. (2018) Water-Soluble Isatoic Anhydrides: A Platform for RNA-SHAPE Analysis and Protein Bioconjugation. ACS Bioconjugate Chemistry, (https://pubs.acs.org/doi/10.1021/acs.bioconjchem.8b00518)
  • Dey A and Chakrabarti K (2018) Current Perspectives of Telomerase Structure and) Function in Eukaryotes with Emerging Views on Telomerase in Human Parasites. Int. J. Mol. Sci. (http://www.mdpi.com/1422-0067/19/2/333).
  • Simoes-Barbosa A, Chakrabarti K, Pearson M, Benarroch D, Shuman S, Johnson PJ. (2012) Box H/ACA snoRNAs are preferred substrates for the trimethylguanosine synthase in the divergent unicellular eukaryote Trichomonas vaginalis. RNA 18(9):1656-65 (http://rnajournal.cshlp.org/content/18/9/1656.long)
  • Chakrabarti K, Pearson M, Grate L, Sterne-Weiler T, Deans J, Donohue J and Ares M Jr. (2007) Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis. RNA 13:1923-1939 (http://rnajournal.cshlp.org/content/13/11/1923.long)
  • Schiller MR, Chakrabarti K, King GF, Schiller NI, Eipper BA and Maciejewski M. (2006) Regulation of Rho GEF activity by intra-molecular and inter-molecular SH3 interactions. Journal of Biological Chemistry 281(27):18774-86. (http://www.jbc.org/content/281/27/18774.long)
  • Chakrabarti K, Lin R, Schiller NI, Wang Y, Koubi D, Fan YX, Rudkin BB, Johnson GR, Schiller MR. (2005) Critical role for Kalirin in nerve growth factor signaling through TrkA. Molecular and Cellular Biology. 25(12):5106-5118. (http://www.jbc.org/content/281/27/18774.long)
  • Chattopadhyay R, Taneja T, Chakrabarti K, Pillai CR, Chitnis CE. (2004) Molecular analysis of the cytoadherence phenotype of a Plasmodium falciparum field isolate that binds intercellular adhesion molecule-1. Molecular and Biochemical Parasitology (Elsevier publications). 133(2):255-265. (http://www.sciencedirect.com/science/article/pii/S0166685103003128)
  • Sharma S, Chattopadhya R, Chakrabarti K, Pati S, Das BS, Chitnis CE. (2004) Epidemiology of malaria transmission and development of natural immunity in a malaria endemic village, San Dulakudar, in Orissa state, India. American Journal of Tropical Medicine & Hygiene (ASTMH) 71(4): 457-65 (http://www.ajtmh.org/content/71/4/457.long)
  • Schiller MR, Chakrabarti K. Kalirin, a scaffold that confers specificity in neurotrophin signal Neuropeptide. 37: 168 (2003)